Mission

Our mission as the Analysis Core is to help researchers in the UCSC Genomics Institute use modern tools to accurately and efficiently analyze large volumes of sequence data. We build the software that makes this possible (the Development team) and we also are responsible for running the "core" analysis pipelines for projects within the Institute (the Production team).

Available Workflows

We are growing our available pipelines to support projects in the Institute including:

Pipeline

Description

RNAseq

RNASeq analysis using RSEM and Kallisto

Whole Exome/Whole Genome - Germline

GATK best practices germline pipeline with bcbio

Whole Genome - Somatic

Whole genome somatic workflows from PCAWG including Sanger, DKFZ, and EMBL best practices or bcbio

Whole Exome - Somatic

Whole exome somatic workflow with bcbio

ProTECT

Neoantigen pipeline

Burndown Chart

Total number of existing jobs vs number of completed jobs.

Ordering Analysis

You can see our current Workflow Pricing for information on the costs of analyzing samples with these pipelines. Large batches can be processed at reduced rates, please contact us for more information using the "Submit Analysis Request" below.

Mission

Available Workflows

Burndown Chart

Ordering Analysis

Current Analysis Workflows & Pricing

Submit Analysis Request

Submit Workflow Creation Request